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stable

Getting Started

  • Building Seidr
  • Getting Started

Basics

  • The Crowd Network Idea
  • Importing text based formats into Seidr
  • Aggregating networks into a crowd network
  • Estimating a hard threshold for a given seidr network
  • Calculating a Network Backbone
  • Getting network statistics

Algorithms

  • ANOVERENCE
  • ARACNE
  • CLR
  • Correlation
  • Ensemble methods
  • GENIE3
  • NARROMI
  • Partial Correlation
  • PLSNET
  • TIGRESS
  • TOM Similarity

Workflows

  • Comparing networks of different species with seidr
  • Running seidr with nextflow

Implementation Details

  • Using multiple processors to infer networks
  • SeidrFiles

References

  • References
Seidr
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  • Edit on GitHub

© Copyright 2020, Bastian Schiffthaler, Alonso Serrano, Nicolas Delhomme Revision 3897e3c4.

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